PML.H

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/* Copyright 2019 Andrew Myers, Aurore Blelly, Axel Huebl
 * Maxence Thevenet, Remi Lehe, Weiqun Zhang
 *
 *
 * This file is part of WarpX.
 *
 * License: BSD-3-Clause-LBNL
 */
#ifndef WARPX_PML_H_
#define WARPX_PML_H_
 
#include "PML_fwd.H"
 
#ifdef WARPX_USE_PSATD
#   include "FieldSolver/SpectralSolver/SpectralSolver.H"
#endif
 
#include <AMReX_MultiFab.H>
#include <AMReX_BoxArray.H>
#include <AMReX_Config.H>
#include <AMReX_FabArray.H>
#include <AMReX_FabFactory.H>
#include <AMReX_GpuContainers.H>
#include <AMReX_IntVect.H>
#include <AMReX_REAL.H>
#include <AMReX_Vector.H>
 
#include <AMReX_BaseFwd.H>
 
#include <array>
#include <memory>
#include <string>
#include <vector>
 
struct Sigma : amrex::Gpu::DeviceVector<amrex::Real>
{
    int lo() const { return m_lo; }
    int hi() const { return m_hi; }
    int m_lo, m_hi;
};
 
struct SigmaBox
{
    SigmaBox (const amrex::Box& box, const amrex::BoxArray& grids,
              const amrex::Real* dx, const amrex::IntVect& ncell, const amrex::IntVect& delta,
              const amrex::Box& regdomain, const amrex::Real v_sigma);
 
    void define_single (const amrex::Box& regdomain, const amrex::IntVect& ncell,
                        const amrex::Array<amrex::Real,AMREX_SPACEDIM>& fac,
                        const amrex::Real v_sigma);
    void define_multiple (const amrex::Box& box, const amrex::BoxArray& grids,
                          const amrex::IntVect& ncell,
                          const amrex::Array<amrex::Real,AMREX_SPACEDIM>& fac,
                          const amrex::Real v_sigma);
 
    void ComputePMLFactorsB (const amrex::Real* dx, amrex::Real dt);
    void ComputePMLFactorsE (const amrex::Real* dx, amrex::Real dt);
 
    using SigmaVect = std::array<Sigma,AMREX_SPACEDIM>;
 
    using value_type = void; // needed by amrex::FabArray
 
    SigmaVect sigma;
    SigmaVect sigma_cumsum;
    SigmaVect sigma_star;
    SigmaVect sigma_star_cumsum;
    SigmaVect sigma_fac;
    SigmaVect sigma_cumsum_fac;
    SigmaVect sigma_star_fac;
    SigmaVect sigma_star_cumsum_fac;
    amrex::Real v_sigma;
 
};
 
class SigmaBoxFactory
    : public amrex::FabFactory<SigmaBox>
{
public:
    SigmaBoxFactory (const amrex::BoxArray& grid_ba, const amrex::Real* dx,
                     const amrex::IntVect& ncell, const amrex::IntVect& delta,
                     const amrex::Box& regular_domain, const amrex::Real v_sigma_sb)
        : m_grids(grid_ba), m_dx(dx), m_ncell(ncell), m_delta(delta), m_regdomain(regular_domain), m_v_sigma_sb(v_sigma_sb) {}
    virtual ~SigmaBoxFactory () = default;
 
    SigmaBoxFactory (const SigmaBoxFactory&) = default;
    SigmaBoxFactory (SigmaBoxFactory&&) noexcept = default;
 
    SigmaBoxFactory () = delete;
    SigmaBoxFactory& operator= (const SigmaBoxFactory&) = delete;
    SigmaBoxFactory& operator= (SigmaBoxFactory&&) = delete;
 
    virtual SigmaBox* create (const amrex::Box& box, int /*ncomps*/,
                              const amrex::FabInfo& /*info*/, int /*box_index*/) const final
        { return new SigmaBox(box, m_grids, m_dx, m_ncell, m_delta, m_regdomain, m_v_sigma_sb); }
    virtual void destroy (SigmaBox* fab) const final {
        delete fab;
    }
    virtual SigmaBoxFactory* clone () const final {
        return new SigmaBoxFactory(*this);
    }
private:
    const amrex::BoxArray& m_grids;
    const amrex::Real* m_dx;
    amrex::IntVect m_ncell;
    amrex::IntVect m_delta;
    amrex::Box m_regdomain;
    amrex::Real m_v_sigma_sb;
};
 
class MultiSigmaBox
    : public amrex::FabArray<SigmaBox>
{
public:
    MultiSigmaBox(const amrex::BoxArray& ba, const amrex::DistributionMapping& dm,
                  const amrex::BoxArray& grid_ba, const amrex::Real* dx,
                  const amrex::IntVect& ncell, const amrex::IntVect& delta,
                  const amrex::Box& regular_domain, const amrex::Real v_sigma_sb);
    void ComputePMLFactorsB (const amrex::Real* dx, amrex::Real dt);
    void ComputePMLFactorsE (const amrex::Real* dx, amrex::Real dt);
private:
    amrex::Real dt_B = -1.e10;
    amrex::Real dt_E = -1.e10;
};
 
enum struct PatchType : int;
 
class PML
{
public:
    PML (const int lev,
         const amrex::BoxArray& ba, const amrex::DistributionMapping& dm,
         const amrex::Geometry* geom, const amrex::Geometry* cgeom,
         int ncell, int delta, amrex::IntVect ref_ratio,
         amrex::Real dt, int nox_fft, int noy_fft, int noz_fft, short grid_type,
         int do_moving_window, int pml_has_particles, int do_pml_in_domain,
         const int psatd_solution_type, const int J_in_time, const int rho_in_time,
         const bool do_pml_dive_cleaning, const bool do_pml_divb_cleaning,
         const amrex::IntVect& fill_guards_fields,
         const amrex::IntVect& fill_guards_current,
         int max_guard_EB, amrex::Real v_sigma_sb,
         const amrex::IntVect do_pml_Lo = amrex::IntVect::TheUnitVector(),
         const amrex::IntVect do_pml_Hi = amrex::IntVect::TheUnitVector());
 
    void ComputePMLFactors (amrex::Real dt);
 
    std::array<amrex::MultiFab*,3> GetE_fp ();
    std::array<amrex::MultiFab*,3> GetB_fp ();
    std::array<amrex::MultiFab*,3> Getj_fp ();
    std::array<amrex::MultiFab*,3> GetE_cp ();
    std::array<amrex::MultiFab*,3> GetB_cp ();
    std::array<amrex::MultiFab*,3> Getj_cp ();
    std::array<amrex::MultiFab*,3> Get_edge_lengths ();
    std::array<amrex::MultiFab*,3> Get_face_areas ();
#ifdef WARPX_MAG_LLG
    std::array<amrex::MultiFab*,3> GetH_fp ();
    std::array<amrex::MultiFab*,3> GetH_cp ();
#endif
    amrex::MultiFab* GetE_fp (int comp);
 
    // Used when WarpX::do_pml_dive_cleaning = true
    amrex::MultiFab* GetF_fp ();
    amrex::MultiFab* GetF_cp ();
 
    // return macroscopic pml multifabs
    amrex::MultiFab* Geteps_fp();
    amrex::MultiFab* Geteps_cp();
    amrex::MultiFab* Getmu_fp();
    amrex::MultiFab* Getmu_cp();
    amrex::MultiFab* Getsigma_fp();
    amrex::MultiFab* Getsigma_cp();
    // Used when WarpX::do_pml_divb_cleaning = true
    amrex::MultiFab* GetG_fp ();
    amrex::MultiFab* GetG_cp ();
 
    const MultiSigmaBox& GetMultiSigmaBox_fp () const
        { return *sigba_fp; }
 
    const MultiSigmaBox& GetMultiSigmaBox_cp () const
        { return *sigba_cp; }
 
#ifdef WARPX_USE_PSATD
    void PushPSATD (const int lev);
#endif
 
    void CopyJtoPMLs (const std::array<amrex::MultiFab*,3>& j_fp,
                    const std::array<amrex::MultiFab*,3>& j_cp);
 
    void Exchange (const std::array<amrex::MultiFab*,3>& mf_pml,
                   const std::array<amrex::MultiFab*,3>& mf,
                   const PatchType& patch_type,
                   const int do_pml_in_domain);
 
    void CopyJtoPMLs (PatchType patch_type,
                    const std::array<amrex::MultiFab*,3>& jp);
 
    void ExchangeF (amrex::MultiFab* F_fp, amrex::MultiFab* F_cp, int do_pml_in_domain);
    void ExchangeF (PatchType patch_type, amrex::MultiFab* Fp, int do_pml_in_domain);
 
#ifdef WARPX_MAG_LLG
    void ExchangeH (const std::array<amrex::MultiFab*,3>& H_fp,
                    const std::array<amrex::MultiFab*,3>& H_cp, int do_pml_in_domain);
    void ExchangeH (PatchType patch_type,
                    const std::array<amrex::MultiFab*,3>& Hp, int do_pml_in_domain);
#endif
    void ExchangeG (amrex::MultiFab* G_fp, amrex::MultiFab* G_cp, int do_pml_in_domain);
    void ExchangeG (PatchType patch_type, amrex::MultiFab* Gp, int do_pml_in_domain);
 
    void FillBoundary ();
    void FillBoundaryE ();
    void FillBoundaryB ();
    void FillBoundaryF ();
    void FillBoundaryG ();
    void FillBoundaryE (PatchType patch_type);
    void FillBoundaryB (PatchType patch_type);
    void FillBoundaryF (PatchType patch_type);
#ifdef WARPX_MAG_LLG
    void FillBoundaryH ();
    void FillBoundaryH (PatchType patch_type);
#endif
    void FillBoundaryG (PatchType patch_type);
 
    bool ok () const { return m_ok; }
 
    void CheckPoint (const std::string& dir) const;
    void Restart (const std::string& dir);
 
    static void Exchange (amrex::MultiFab& pml, amrex::MultiFab& reg, const amrex::Geometry& geom, int do_pml_in_domain);
 
    ~PML () = default;
 
private:
    bool m_ok;
 
    bool m_dive_cleaning;
    bool m_divb_cleaning;
 
    const amrex::IntVect m_fill_guards_fields;
    const amrex::IntVect m_fill_guards_current;
 
    const amrex::Geometry* m_geom;
    const amrex::Geometry* m_cgeom;
 
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_E_fp;
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_B_fp;
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_j_fp;
 
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_edge_lengths;
 
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_E_cp;
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_B_cp;
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_j_cp;
 
    // Used when WarpX::do_pml_dive_cleaning = true
    std::unique_ptr<amrex::MultiFab> pml_F_fp;
    std::unique_ptr<amrex::MultiFab> pml_F_cp;
 
#ifdef WARPX_MAG_LLG
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_H_fp;
    std::array<std::unique_ptr<amrex::MultiFab>,3> pml_H_cp;
#endif
 
    // macroproperties in PML, eps-permittivity, mu-permeability, sigma-condictivity
    std::unique_ptr<amrex::MultiFab> pml_eps_fp;
    std::unique_ptr<amrex::MultiFab> pml_mu_fp;
    std::unique_ptr<amrex::MultiFab> pml_sigma_fp;
    std::unique_ptr<amrex::MultiFab> pml_eps_cp;
    std::unique_ptr<amrex::MultiFab> pml_mu_cp;
    std::unique_ptr<amrex::MultiFab> pml_sigma_cp;
    // Used when WarpX::do_pml_divb_cleaning = true
    std::unique_ptr<amrex::MultiFab> pml_G_fp;
    std::unique_ptr<amrex::MultiFab> pml_G_cp;
 
    std::unique_ptr<MultiSigmaBox> sigba_fp;
    std::unique_ptr<MultiSigmaBox> sigba_cp;
 
#ifdef WARPX_USE_PSATD
    std::unique_ptr<SpectralSolver> spectral_solver_fp;
    std::unique_ptr<SpectralSolver> spectral_solver_cp;
#endif
 
    // Factory for field data
    std::unique_ptr<amrex::FabFactory<amrex::FArrayBox> > pml_field_factory;
 
    amrex::FabFactory<amrex::FArrayBox> const& fieldFactory () const noexcept {
        return *pml_field_factory;
    }
#ifdef AMREX_USE_EB
    amrex::EBFArrayBoxFactory const& fieldEBFactory () const noexcept {
        return static_cast<amrex::EBFArrayBoxFactory const&>(*pml_field_factory);
    }
#endif
 
    static amrex::BoxArray MakeBoxArray (bool single_box_domain,
                                         const amrex::Box& regular_domain,
                                         const amrex::Geometry& geom,
                                         const amrex::BoxArray& grid_ba,
                                         const amrex::IntVect& ncell,
                                         int do_pml_in_domain,
                                         const amrex::IntVect& do_pml_Lo,
                                         const amrex::IntVect& do_pml_Hi);
 
    static amrex::BoxArray MakeBoxArray_single (const amrex::Box& regular_domain,
                                                const amrex::BoxArray& grid_ba,
                                                const amrex::IntVect& ncell,
                                                const amrex::IntVect& do_pml_Lo,
                                                const amrex::IntVect& do_pml_Hi);
 
    static amrex::BoxArray MakeBoxArray_multiple (const amrex::Geometry& geom,
                                                  const amrex::BoxArray& grid_ba,
                                                  const amrex::IntVect& ncell,
                                                  int do_pml_in_domain,
                                                  const amrex::IntVect& do_pml_Lo,
                                                  const amrex::IntVect& do_pml_Hi);
 
    static void CopyToPML (amrex::MultiFab& pml, amrex::MultiFab& reg, const amrex::Geometry& geom);
};
 
#ifdef WARPX_USE_PSATD
void PushPMLPSATDSinglePatch( const int lev,
    SpectralSolver& solver,
    std::array<std::unique_ptr<amrex::MultiFab>,3>& pml_E,
    std::array<std::unique_ptr<amrex::MultiFab>,3>& pml_B,
    std::unique_ptr<amrex::MultiFab>& pml_F,
    std::unique_ptr<amrex::MultiFab>& pml_G,
    const amrex::IntVect& fill_guards);
#endif
 
#endif